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This occurs because close relatives are much more likely to share the same alleles than unrelated individuals. This is especially important for deleterious recessive genes, which are harmless and inactive in a heterozygous pairing, but when homozygous can cause serious developmental defects. Such offspring have a much higher chance of death before reaching the age of reproduction, leading to what biologists call inbreeding depression, a measurable decrease in fitness due to inbreeding among populations with deleterious recessives" (wikipedia.org).
There are three other theories that attempt to explain the taboo's existence...
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